Unexpected diversity of basidiomycetous endophytes in sapwood and leaves of Hevea.
Identifieur interne : 000232 ( Main/Exploration ); précédent : 000231; suivant : 000233Unexpected diversity of basidiomycetous endophytes in sapwood and leaves of Hevea.
Auteurs : Rachael Martin [États-Unis] ; Romina Gazis [États-Unis] ; Demetra Skaltsas [États-Unis] ; Priscila Chaverri [Costa Rica] ; David Hibbett [États-Unis]Source :
- Mycologia [ 0027-5514 ]
Descripteurs français
- KwdFr :
- Basidiomycota (classification), Basidiomycota (génétique), Basidiomycota (isolement et purification), Biodiversité (MeSH), Bois (microbiologie), Données de séquences moléculaires (MeSH), Endophytes (classification), Endophytes (génétique), Endophytes (isolement et purification), Feuilles de plante (microbiologie), Hevea (microbiologie), Phylogenèse (MeSH).
- MESH :
- génétique : Basidiomycota, Endophytes.
- isolement et purification : Basidiomycota, Endophytes.
- microbiologie : Bois, Feuilles de plante, Hevea.
- classification : Basidiomycota, Biodiversité, Données de séquences moléculaires, Endophytes, Phylogenèse.
English descriptors
- KwdEn :
- Basidiomycota (classification), Basidiomycota (genetics), Basidiomycota (isolation & purification), Biodiversity (MeSH), Endophytes (classification), Endophytes (genetics), Endophytes (isolation & purification), Hevea (microbiology), Molecular Sequence Data (MeSH), Phylogeny (MeSH), Plant Leaves (microbiology), Wood (microbiology).
- MESH :
- classification : Basidiomycota, Endophytes.
- genetics : Basidiomycota, Endophytes.
- isolation & purification : Basidiomycota, Endophytes.
- microbiology : Hevea, Plant Leaves, Wood.
- Biodiversity, Molecular Sequence Data, Phylogeny.
Abstract
Research on fungal endophytes has expanded dramatically in recent years, but little is known about the diversity and ecological roles of endophytic basidiomycetes. Here we report the analysis of 310 basidiomycetous endophytes isolated from wild and planted populations of the rubber tree genus, Hevea. Species accumulation curves were nonasymptotic, as in the majority of endophyte surveys, indicating that more sampling is needed to recover the true diversity of the community. One hundred eighteen OTUs were delimited, representing nine orders of Basidiomycota (Agaricales, Atheliales, Auriculariales, Cantharellales, Hymenochaetales, Polyporales, Russulales, Septobasidiales, Tremellales). The diversity of basidiomycetous endophytes found inhabiting wild populations of Hevea was comparable to that present in plantations. However, when samples were segregated by tissue type, sapwood of wild populations was found to contain a higher number of species than sapwood of planted trees. Seventy-five percent of isolates were members of the Polyporales, the majority in the phlebioid clade. Most of the species belong to clades known to cause a white-rot type of wood decay. Two species in the insect-associated genus Septobasidium were isolated. The most frequently isolated genera included Bjerkandera, Ceriporia, Phanerochaete, Phlebia, Rigidoporus, Tinctoporellus, Trametes (Polyporales), Peniophora, Stereum (Russulales) and Coprinellus (Agaricales), all of which have been reported as endophytes from a variety of hosts, across wide geographic locations. Literature records on the geographic distribution and host association of these genera revealed that their distribution and substrate affinity could be extended if the endophytic niche was investigated as part of fungal biodiversity surveys.
DOI: 10.3852/14-206
PubMed: 25572095
Affiliations:
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Chaverri</name><affiliation wicri:level="4"><nlm:affiliation>University of Maryland, Department of Plant Science and Landscape Architecture, 2112 Plant Sciences Building, College Park, Maryland 20742, and Universidad de Costa Rica, Escuela de Biología, Apdo. 11501-2060, San Pedro, San José, Costa Rica.</nlm:affiliation><country xml:lang="fr">Costa Rica</country><wicri:regionArea>University of Maryland, Department of Plant Science and Landscape Architecture, 2112 Plant Sciences Building, College Park, Maryland 20742, and Universidad de Costa Rica, Escuela de Biología, Apdo. 11501-2060, San Pedro, San José</wicri:regionArea><orgName type="university">Université du Maryland</orgName><placeName><settlement type="city">College Park (Maryland)</settlement><region type="state">Maryland</region></placeName></affiliation></author><author><name sortKey="Hibbett, David" sort="Hibbett, David" uniqKey="Hibbett D" first="David" last="Hibbett">David Hibbett</name><affiliation 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xml:lang="en">Unexpected diversity of basidiomycetous endophytes in sapwood and leaves of Hevea.</title><author><name sortKey="Martin, Rachael" sort="Martin, Rachael" uniqKey="Martin R" first="Rachael" last="Martin">Rachael Martin</name><affiliation wicri:level="2"><nlm:affiliation>Clark University, Biology Department, 950 Main Street, Worcester, Massachusetts 01610.</nlm:affiliation><country xml:lang="fr">États-Unis</country><placeName><region type="state">Massachusetts</region></placeName><wicri:cityArea>Clark University, Biology Department, 950 Main Street, Worcester</wicri:cityArea></affiliation></author><author><name sortKey="Gazis, Romina" sort="Gazis, Romina" uniqKey="Gazis R" first="Romina" last="Gazis">Romina Gazis</name><affiliation wicri:level="2"><nlm:affiliation>Clark University, Biology Department, 950 Main Street, Worcester, Massachusetts 01610.</nlm:affiliation><country xml:lang="fr">États-Unis</country><placeName><region type="state">Massachusetts</region></placeName><wicri:cityArea>Clark University, Biology Department, 950 Main Street, Worcester</wicri:cityArea></affiliation></author><author><name sortKey="Skaltsas, Demetra" sort="Skaltsas, Demetra" uniqKey="Skaltsas D" first="Demetra" last="Skaltsas">Demetra Skaltsas</name><affiliation wicri:level="2"><nlm:affiliation>University of Maryland, Department of Plant Science and Landscape Architecture, 2112 Plant Sciences Building, College Park, Maryland 20742.</nlm:affiliation><country xml:lang="fr">États-Unis</country><placeName><region type="state">Maryland</region></placeName><wicri:cityArea>University of Maryland, Department of Plant Science and Landscape Architecture, 2112 Plant Sciences Building, College Park</wicri:cityArea></affiliation></author><author><name sortKey="Chaverri, Priscila" sort="Chaverri, Priscila" uniqKey="Chaverri P" first="Priscila" last="Chaverri">Priscila Chaverri</name><affiliation wicri:level="4"><nlm:affiliation>University of Maryland, Department of Plant Science and Landscape Architecture, 2112 Plant Sciences Building, College Park, Maryland 20742, and Universidad de Costa Rica, Escuela de Biología, Apdo. 11501-2060, San Pedro, San José, Costa Rica.</nlm:affiliation><country xml:lang="fr">Costa Rica</country><wicri:regionArea>University of Maryland, Department of Plant Science and Landscape Architecture, 2112 Plant Sciences Building, College Park, Maryland 20742, and Universidad de Costa Rica, Escuela de Biología, Apdo. 11501-2060, San Pedro, San José</wicri:regionArea><orgName type="university">Université du Maryland</orgName><placeName><settlement type="city">College Park (Maryland)</settlement><region type="state">Maryland</region></placeName></affiliation></author><author><name sortKey="Hibbett, David" sort="Hibbett, David" uniqKey="Hibbett D" first="David" last="Hibbett">David Hibbett</name><affiliation wicri:level="1"><nlm:affiliation>Clark University, Biology Department, 950 Main Street, Worcester, Massachusetts 01610 DHibbett@clarku.edu.</nlm:affiliation><country wicri:rule="url">États-Unis</country><wicri:regionArea>Clark University, Biology Department, 950 Main Street, Worcester</wicri:regionArea><wicri:noRegion>Worcester</wicri:noRegion></affiliation></author></analytic><series><title level="j">Mycologia</title><idno type="ISSN">0027-5514</idno></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Basidiomycota (classification)</term><term>Basidiomycota (genetics)</term><term>Basidiomycota (isolation & purification)</term><term>Biodiversity (MeSH)</term><term>Endophytes (classification)</term><term>Endophytes (genetics)</term><term>Endophytes (isolation & purification)</term><term>Hevea (microbiology)</term><term>Molecular Sequence Data (MeSH)</term><term>Phylogeny (MeSH)</term><term>Plant Leaves (microbiology)</term><term>Wood (microbiology)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Basidiomycota (classification)</term><term>Basidiomycota (génétique)</term><term>Basidiomycota (isolement et purification)</term><term>Biodiversité (MeSH)</term><term>Bois (microbiologie)</term><term>Données de séquences moléculaires (MeSH)</term><term>Endophytes (classification)</term><term>Endophytes (génétique)</term><term>Endophytes (isolement et purification)</term><term>Feuilles de plante (microbiologie)</term><term>Hevea (microbiologie)</term><term>Phylogenèse (MeSH)</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Basidiomycota</term><term>Endophytes</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Basidiomycota</term><term>Endophytes</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Basidiomycota</term><term>Endophytes</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Basidiomycota</term><term>Endophytes</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Basidiomycota</term><term>Endophytes</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Bois</term><term>Feuilles de plante</term><term>Hevea</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Hevea</term><term>Plant Leaves</term><term>Wood</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Biodiversity</term><term>Molecular Sequence Data</term><term>Phylogeny</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="fr"><term>Basidiomycota</term><term>Biodiversité</term><term>Données de séquences moléculaires</term><term>Endophytes</term><term>Phylogenèse</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Research on fungal endophytes has expanded dramatically in recent years, but little is known about the diversity and ecological roles of endophytic basidiomycetes. Here we report the analysis of 310 basidiomycetous endophytes isolated from wild and planted populations of the rubber tree genus, Hevea. Species accumulation curves were nonasymptotic, as in the majority of endophyte surveys, indicating that more sampling is needed to recover the true diversity of the community. One hundred eighteen OTUs were delimited, representing nine orders of Basidiomycota (Agaricales, Atheliales, Auriculariales, Cantharellales, Hymenochaetales, Polyporales, Russulales, Septobasidiales, Tremellales). The diversity of basidiomycetous endophytes found inhabiting wild populations of Hevea was comparable to that present in plantations. However, when samples were segregated by tissue type, sapwood of wild populations was found to contain a higher number of species than sapwood of planted trees. Seventy-five percent of isolates were members of the Polyporales, the majority in the phlebioid clade. Most of the species belong to clades known to cause a white-rot type of wood decay. Two species in the insect-associated genus Septobasidium were isolated. The most frequently isolated genera included Bjerkandera, Ceriporia, Phanerochaete, Phlebia, Rigidoporus, Tinctoporellus, Trametes (Polyporales), Peniophora, Stereum (Russulales) and Coprinellus (Agaricales), all of which have been reported as endophytes from a variety of hosts, across wide geographic locations. Literature records on the geographic distribution and host association of these genera revealed that their distribution and substrate affinity could be extended if the endophytic niche was investigated as part of fungal biodiversity surveys. </div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">25572095</PMID><DateCompleted><Year>2015</Year><Month>08</Month><Day>13</Day></DateCompleted><DateRevised><Year>2015</Year><Month>03</Month><Day>20</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">0027-5514</ISSN><JournalIssue CitedMedium="Print"><Volume>107</Volume><Issue>2</Issue><PubDate><MedlineDate>2015 Mar-Apr</MedlineDate></PubDate></JournalIssue><Title>Mycologia</Title><ISOAbbreviation>Mycologia</ISOAbbreviation></Journal><ArticleTitle>Unexpected diversity of basidiomycetous endophytes in sapwood and leaves of Hevea.</ArticleTitle><Pagination><MedlinePgn>284-97</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.3852/14-206</ELocationID><Abstract><AbstractText>Research on fungal endophytes has expanded dramatically in recent years, but little is known about the diversity and ecological roles of endophytic basidiomycetes. Here we report the analysis of 310 basidiomycetous endophytes isolated from wild and planted populations of the rubber tree genus, Hevea. Species accumulation curves were nonasymptotic, as in the majority of endophyte surveys, indicating that more sampling is needed to recover the true diversity of the community. One hundred eighteen OTUs were delimited, representing nine orders of Basidiomycota (Agaricales, Atheliales, Auriculariales, Cantharellales, Hymenochaetales, Polyporales, Russulales, Septobasidiales, Tremellales). The diversity of basidiomycetous endophytes found inhabiting wild populations of Hevea was comparable to that present in plantations. However, when samples were segregated by tissue type, sapwood of wild populations was found to contain a higher number of species than sapwood of planted trees. Seventy-five percent of isolates were members of the Polyporales, the majority in the phlebioid clade. Most of the species belong to clades known to cause a white-rot type of wood decay. Two species in the insect-associated genus Septobasidium were isolated. The most frequently isolated genera included Bjerkandera, Ceriporia, Phanerochaete, Phlebia, Rigidoporus, Tinctoporellus, Trametes (Polyporales), Peniophora, Stereum (Russulales) and Coprinellus (Agaricales), all of which have been reported as endophytes from a variety of hosts, across wide geographic locations. Literature records on the geographic distribution and host association of these genera revealed that their distribution and substrate affinity could be extended if the endophytic niche was investigated as part of fungal biodiversity surveys. </AbstractText><CopyrightInformation>© 2015 by The Mycological Society of America.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Martin</LastName><ForeName>Rachael</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>Clark University, Biology Department, 950 Main Street, Worcester, Massachusetts 01610.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Gazis</LastName><ForeName>Romina</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>Clark University, Biology Department, 950 Main Street, Worcester, Massachusetts 01610.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Skaltsas</LastName><ForeName>Demetra</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>University of Maryland, Department of Plant Science and Landscape Architecture, 2112 Plant Sciences Building, College Park, Maryland 20742.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chaverri</LastName><ForeName>Priscila</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>University of Maryland, Department of Plant Science and Landscape Architecture, 2112 Plant Sciences Building, College Park, Maryland 20742, and Universidad de Costa Rica, Escuela de Biología, Apdo. 11501-2060, San Pedro, San José, Costa Rica.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hibbett</LastName><ForeName>David</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>Clark University, Biology Department, 950 Main Street, Worcester, Massachusetts 01610 DHibbett@clarku.edu.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013486">Research Support, U.S. Gov't, Non-P.H.S.</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2015</Year><Month>01</Month><Day>08</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Mycologia</MedlineTA><NlmUniqueID>0400764</NlmUniqueID><ISSNLinking>0027-5514</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001487" MajorTopicYN="N">Basidiomycota</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D044822" MajorTopicYN="Y">Biodiversity</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D060026" MajorTopicYN="N">Endophytes</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D028482" MajorTopicYN="N">Hevea</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018515" MajorTopicYN="N">Plant Leaves</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014934" MajorTopicYN="N">Wood</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Polyporales</Keyword><Keyword MajorTopicYN="N">natural rubber</Keyword><Keyword MajorTopicYN="N">tropical fungi</Keyword><Keyword MajorTopicYN="N">white-rot fungi</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2015</Year><Month>1</Month><Day>10</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2015</Year><Month>1</Month><Day>13</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2015</Year><Month>8</Month><Day>14</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">25572095</ArticleId><ArticleId IdType="pii">14-206</ArticleId><ArticleId IdType="doi">10.3852/14-206</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Costa Rica</li><li>États-Unis</li></country><region><li>Maryland</li><li>Massachusetts</li></region><settlement><li>College Park (Maryland)</li></settlement><orgName><li>Université du Maryland</li></orgName></list><tree><country name="États-Unis"><region name="Massachusetts"><name sortKey="Martin, Rachael" sort="Martin, Rachael" uniqKey="Martin R" first="Rachael" last="Martin">Rachael Martin</name></region><name sortKey="Gazis, Romina" sort="Gazis, Romina" uniqKey="Gazis R" first="Romina" last="Gazis">Romina Gazis</name><name sortKey="Hibbett, David" sort="Hibbett, David" uniqKey="Hibbett D" first="David" last="Hibbett">David Hibbett</name><name sortKey="Skaltsas, Demetra" sort="Skaltsas, Demetra" uniqKey="Skaltsas D" first="Demetra" last="Skaltsas">Demetra Skaltsas</name></country><country name="Costa Rica"><region name="Maryland"><name sortKey="Chaverri, Priscila" sort="Chaverri, Priscila" uniqKey="Chaverri P" first="Priscila" last="Chaverri">Priscila Chaverri</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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